Search results for " Community structure"
showing 10 items of 23 documents
Agricultural management affects the response of soil bacterial community structure and respiration to water-stress
2013
International audience; Soil microorganisms are responsible for organic matter decomposition processes that regulate soil carbon storage and mineralisation to CO2. Climate change is predicted to increase the frequency of drought events, with uncertain consequences for soil microbial communities. In this study we tested the hypothesis that agricultural management used to enhance soil carbon stocks would increase the stability of microbial community structure and activity in response to water-stress. Soil was sampled from a long-term field trial with three soil carbon management systems and was used in a laboratory study of the effect of a dry wet cycle on organic C mineralisation and microbi…
Evidence for shifts in the structure and abundance of the microbial community in a long-term PCB-contaminated soil under bioremediation.
2011
International audience; Although the impact of bioremediation of PCB-contaminated sites on the indigenous microbial community is a key question for soil restoration, it remains poorly understood. Therefore, a small-scale bioremediation assay made of (a) a biostimulation treatment with carvone, soya lecithin and xylose and (b) two bioaugmentation treatments, one with a TSZ7 mixed culture and another with a Rhodococcus sp. Z6 pure strain was set up. Changes in the structure of the global soil microbial community and in the abundances of different taxonomic phyla were monitored using ribosomal intergenic spacer analysis (RISA) and real-time PCR. After an 18-month treatment, the structure of th…
Effets du mode de travail du sol sur les microorganismes à l'échelle du profil cultural
2009
Soil tillage modifies the location of crop residues and soil structure and affects microbial populations and activities such as mineralization of soil organic matter. The aim of this work was to compare the effect of two tillage systems (traditional mouldboard ploughing, LT, and reduced tillage, TR) on crop residues distribution and soil structure as well as their consequences on soil microbial biomass (BM), the potential activity of C mineralization (Cmin) and soil bacterial community structure (through T-RFLP). In order to study simultaneously the effects of soil structure modifications and crop residues distribution on these microbial parameters we used a stratified sampling scheme based…
Ecological impacts of global warming and water abstraction on lakes and reservoirs due to changes in water level and related changes in salinity
2015
According to the Intergovernmental Panel on Climate Change report released in September 2014, unprecedented changes in temperature and precipitation patterns have been recorded globally in recent decades and further change is predicted to occur in the near future, mainly as the result of human activity. In particular, projections show that the Mediterranean climate zone will be markedly affected with significant implications for lake water levels and salinity. This may be exacerbated by increased demands for irrigation water. Based on long-term data from seven lakes and reservoirs covering a geographical gradient of 52 of latitudes and a literature review, we discuss how changes in water le…
Warmer climates boost cyanobacterial dominance in shallow lakes
2011
Dominance by cyanobacteria hampers human use of lakes and reservoirs worldwide. Previous studies indicate that excessive nutrient loading and warmer conditions promote dominance by cyanobacteria, but evidence from global scale field data has so far been scarce. Our analysis, based on a study of 143 lakes along a latitudinal transect ranging from subarctic Europe to southern South America, shows that although warmer climates do not result in higher overall phytoplankton biomass, the percentage of the total phytoplankton biovolume attributable to cyanobacteria increases steeply with temperature. Our results also reveal that the percent cyanobacteria is greater in lakes with high rates of ligh…
OVERVIEW OF SOME TECHNIQUES ON DETECTION AND CHARACTERIZATION OF ARBUSCULAR MYCORRHIZAL FUNGI (A CASE STUDY IN ITALY)
2019
Arbuscular mycorrhizal fungi are mutualistic symbionts widespread among both cultivated and wild plants. They have different beneficial roles including stimulating plant growth and tolerance to wide varieties of biotic as well as abiotic stresses. So,the exact and optimize methods for quantification and detection of these fungi in roots and soils are necessary.These techniques are based on fungal sporesmorphological characterization as well as molecular characterization of fungi in soil or root samples.The work was carried out at the Institute for Sustainable Plant Protection (IPSP) of the National Research Council of Italy (CNR) in Turin. For this purpose, the AM fungal root colonization p…
Seasonal patterns of biodiversity in Mediterranean coastal lagoons
2019
Aim: Understanding and quantifying the seasonal patterns in biodiversity of phyto- benthos, macro-zoobenthos and fishes in Mediterranean coastal lagoons, and the species dependence upon environmental factors. Location: The study was carried out in the “Stagnone di Marsala e Saline di Trapani e Paceco,” the largest coastal lagoon system in the central Mediterranean Sea (Sicily, Italy), a Special Protection Area located along one of the central ecological corridors joining Africa and Europe. Methods: The coastal lagoon system was selected as a model ecosystem to investi- gate the seasonal variations in biodiversity indices and dominance–diversity relation- ships in phytobenthos, macro-zoobent…
Soil biogeochemistry and microbial community dynamics in Pinus pinaster Ait. forests subjected to increased fire frequency.
2022
Fire frequency might increase in many fire-dominated ecosystems of the world due to the combined effects of global warming, land-use change and increased human pressures. Understanding how changes in fire frequency can affect the main soil biogeochemical dynamics, as well as the microbial community, in the long term is utmost important. Here we determined the effect of changes in fire frequency and other fire history characteristics on soil C and N dynamics and the main microbial groups (using soil fatty acid profiles), in Pinus pinaster forests from central Spain. Stands were chosen to differ in the number of fires (1 to 3) occurred between 1976 and 2018, in the time elapsed since the last…
Comparison of different tillage systems in organic farming : effect of soil structure and organic matter repartition on soil micro-organisms and thei…
2009
Over the last decades, the surface traditionally ploughed has tended to decrease and replaced by shallow working tillage techniques without soil inversion, i.e., no tillage or reduced tillage with tines or discs. These techniques were mostly developed in conventional farming systems but nowadays they are also developed in organic farming systems. Nevertheless, these tillage techniques could generate crop nutrients deficiencies and a deterioration of soil structure, especially during the first years of their application. As the use of synthetic fertilizers is forbidden in organic farming, a decrease of the soil fertility could be very detrimental for crop growth. Indeed, soil micro-organisms…
Identifying Influential Nodes: The Overlapping Modularity Vitality Framework
2023
This paper proposes an Overlapping Modularity Vitality framework for identifying influential nodes in networks with overlapping community structures. The framework uses a generalized modularity equation and the concept of vitality to calculate the centrality of a node. We investigate three definitions of overlapping modularity and three ranking strategies prioritizing hubs, bridges, or both types of nodes. Experimental investigations involving real-world networks show that the proposed framework demonstrates the benefit of incorporating overlapping community structure information to identify critical nodes in a network.